Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015848366.1_cds_XP_016510354.1_23198
CDS Infomation

[gene=LOC107827686] [db_xref=GeneID:107827686] [protein=zinc protease PQQL-like] [protein_id=XP_016510354.1] [location=join(1379..1417,1522..1650,1818..2078,2209..2346,2425..2494,2576..2798,3457..3559,7900..8121,8476..8640,9404..9553,9658..9749,9937..10021,10111..10194,10273..10389,10486..10593,12147..12227,12318..12443)] [gbkey=CDS]
Sequence

ATGGCTGTTATCGTTGTGGGAGATATAACTGAAACGCAGAATATAATTGATTTGATCAAA
ACATACTTTGAAAGGCAACCAAGAGGTATGCCACAGCATTTGGAATTCCCTCTTCCAAAG
CACACTGAACCTAGATTGATCGCACATGTCGATAGTGCACTTGTGAAGTGGAGAATGTCT
GTGGTATACGTCACCTTTATGTTTGAGAAAGAAGGATGGAAATGTGTGAATGATGTGTTC
ATAAACATTCAAAGAATGCTTCTTCAGAAAGTTATTCTTGGAAGGTTGAAGAAAAGATTT
TCGAGCATGAGCAAACCAAAACAACTTCAGTACTCTAGGGACGATTCACACATGTATACC
ATATATGTGGTTAGTGTAGAGTGTGAAGGATATGAAACAAATAAGGTGTTGGAGACGTTC
CTTGTTGAGATTGCGCGAATGAGAGTCCATGGGATCAAAGAAAATGAATTAAGTGAAGGA
AAAGACTTTTGCCTGTGCATCCCTAAAGGCAGATACCTGAATCATCATGACCGTTCTTCA
GAGCAACTACGAAGGACCTACACCAGTCACTTCGTTTATAATGAAGCTGACTTTTCTCCT
AAGCTGGAGGCACAACTTATGATAGCTCTTACAAAGAGAATCAATATGGAGCTGATCAAG
AACTTCTGTGAGATGCAGTTTGCAGCATCTAACTTATCAGTTATCATATTTCAAAGTAAG
ACTTTTGTGACACAAGAGGAAATGAAGAGGTCATTGCAGAAGATTACTGATTTTGAAAAA
GAGGGATCCTTTCCTAGTTGGTCAGATGAAGAAATGGAGGGTTTAACCAATCTGATACAA
GAGATGGAGATTGAATCTGGGAAAATTGTTGAGCGACTGGAACATTTTGATATTGGAGCT
GTGGAGCTTATCTTATCTAATGGCATGCAAGTCACTTACCAGTGTACAAAGAATGATGAT
AAGGTCGTTTTAAGAGGATTCTCATATGGTGGTCTCTCAGAAGTGACTGAAACAGATATC
CTCAGTTGCTCGTATTCAAGTGTAATTGGACAAATTATCTGGCTTTATAGCTCCAAGAAT
CTTCCTATGATACGTGATAAAGTCAATTTCGCTATTGAGGTGGACGAGTATAAAAGAGCT
TTCTGTGTGAACTTTGACTCATCAGATATCGAACTTGCACTTCAGATTCTATATTTACTA
TTCACAAGTGACTTAGAACCTGAAGAAGAAGAATTCCAAGCTCTAATTGAGGACCTAAAG
ATTCGCCTGTCTCCTGCACATCAACAACCGGCTGATGTCCTAATAGATACCGTTAAGGAG
ATCAACAGCGGTAAATCTTGCTATTACAAGGCACCTGTAGCTGAGGATATGTCAAATATT
GATGCAACAAAGGCATGGCAATACTTTCAAAATTGCTTTAGAGATCCCTCGAGCTTCCGA
GTGATTCTTGTTGGGAACTTGGACACTGCTTCTGTCAATTCACTTTTGTCGCGTTACTTG
GGTGGAATACCAAGGCCTCATCGACCTATCATGAAATTTCAACGTGGGAAGCTCACCACA
GCACCTTTCCATTTTCCTCCAACTGTGATCAAGGAAGAAGTGTCTCTTGCTGTGGGCAGT
GGTAATGGAATGTATACTTGTATAAGTTTCCCACTCCGTTTCAACAATCAGACATTGGAA
GAAGATCTTCTTCTGTTGATAATTTTGAGGAATCTCTTGAAAGTCAAAGTCACCCAAGTA
CTTCGTCACGAAAAAGGGATTGCGTACAATGTTGACGTGGATACATTCAATCCTAATGGT
GACTGGTCTTGTAGTGGGAGTAAACCTGGAACAATTAACTTTAATCTCCTAATCAAGGAC
AATGACGCAGCCCAGATGGCTGTAGATGCAGTAGTGCATGAGATAGAACAACTAAAAGAA
GTTGGTCCTTCACAGAATCTTGTTCAGCATGTATTGGACCGGAGACCATCATTGGAGGAG
GAGGAGAGAAACACGTCTTTGATGAACCAAATGTTGCAAGCTTATGGGTCGAACTTGTAT
GCTGGGAATATTGATCAGAGTTACAAGATTCTCAGGGACATGAATAGAAGAGCCTGGGAT
CTTTTCAATGCGGACGTTGCCAAGTCCACTTTGAAAAGGATGCTACCATATCCTTGCCAA
GAACAACACACTATTGTGAACCTCAGGTGTTGA

Peptide Sequence

PEP ID

XP_016510354.1
PEP Infomation

PREDICTED: zinc protease PQQL-like [Nicotiana tabacum]
Sequence

MAVIVVGDITETQNIIDLIKTYFERQPRGMPQHLEFPLPKHTEPRLIAHVDSALVKWRMS
VVYVTFMFEKEGWKCVNDVFINIQRMLLQKVILGRLKKRFSSMSKPKQLQYSRDDSHMYT
IYVVSVECEGYETNKVLETFLVEIARMRVHGIKENELSEGKDFCLCIPKGRYLNHHDRSS
EQLRRTYTSHFVYNEADFSPKLEAQLMIALTKRINMELIKNFCEMQFAASNLSVIIFQSK
TFVTQEEMKRSLQKITDFEKEGSFPSWSDEEMEGLTNLIQEMEIESGKIVERLEHFDIGA
VELILSNGMQVTYQCTKNDDKVVLRGFSYGGLSEVTETDILSCSYSSVIGQIIWLYSSKN
LPMIRDKVNFAIEVDEYKRAFCVNFDSSDIELALQILYLLFTSDLEPEEEEFQALIEDLK
IRLSPAHQQPADVLIDTVKEINSGKSCYYKAPVAEDMSNIDATKAWQYFQNCFRDPSSFR
VILVGNLDTASVNSLLSRYLGGIPRPHRPIMKFQRGKLTTAPFHFPPTVIKEEVSLAVGS
GNGMYTCISFPLRFNNQTLEEDLLLLIILRNLLKVKVTQVLRHEKGIAYNVDVDTFNPNG
DWSCSGSKPGTINFNLLIKDNDAAQMAVDAVVHEIEQLKEVGPSQNLVQHVLDRRPSLEE
EERNTSLMNQMLQAYGSNLYAGNIDQSYKILRDMNRRAWDLFNADVAKSTLKRMLPYPCQ
EQHTIVNLRC

Transcript Sequence

Gene sequence data has not been registered.